Linear and Quadratic Discriminant Analysis using Sklearn

Last Updated : 20 May, 2024

Linear Discriminant Analysis (LDA) and Quadratic Discriminant Analysis (QDA) are two well-known classification methods that are used in machine learning to find patterns and put things into groups. They are especially helpful when you have labeled data and want to classify new observations notes into pre-defined categories.

In this we will implement both these techniques, Linear and Quadratic Discriminant Analysis using Sklearn.

Table of Content

Understanding Linear and Quadratic Discriminant Analysis

Linear Discriminant Analysis (LDA)

Linear Discriminant Analysis assumes that the data in each class is normally distributed and has the same correlation matrix. It finds a linear combination of features that best separates the classes apart, sometimes referred to as Fisher's linear discriminant. The idea is to maximize the distance between classes while projecting the data into a lower-dimensional space.

Under the presumptions, LDA determines the best linear decision boundary by minimizing the ratio of variation within a class to variance across classes.

The steps to compute LDA using sklearn are:

Compute the mean vectors for each class.
Compute the within-class and between-class scatter matrices.
Compute the eigenvalues and eigenvectors for the scatter matrices.
Select the top k eigenvectors that match to the k biggest eigenvalues to make a new feature space.
Project the data onto the new feature space.

Quadratic Discriminant Analysis (QDA)

QDA is similar to LDA but does not assume that the correlation matrices of each class are equal. This helps QDA to build more flexible decision limits by describing each class with its own correlation matrix.

The steps to compute QDA using sklearn are:

Compute the mean vector and correlation matrix for each class.
Use the quadratic form of the discriminant function to describe new data.

Implementing Linear and Quadratic Discriminant Analysis with Scikit-Learn

Scikit-Learn is a well-known Python machine learning package that offers effective implementations of Linear Discriminant Analysis (LDA) and Quadratic Discriminant Analysis (QDA) via their respective classes. To use LDA or QDA in Scikit-Learn, Let's go through with below steps

1. Import the Necessary Modules

Python

import numpy as np import matplotlib.pyplot as plt from sklearn.datasets import make_classification from sklearn.model_selection import train_test_split from sklearn.discriminant_analysis import LinearDiscriminantAnalysis, QuadraticDiscriminantAnalysis from sklearn.metrics import accuracy_score, confusion_matrix, classification_report

2. Generate Data

Python

# Generate synthetic data X, y = make_classification(n_samples=1000, n_features=2, n_informative=2, n_redundant=0,                            n_clusters_per_class=1, n_classes=3, random_state=42) X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.3, random_state=42)

Applying Linear Discriminant Analysis (LDA)

Python

# Initialize and train the LDA model lda = LinearDiscriminantAnalysis() lda.fit(X_train, y_train) y_pred_lda = lda.predict(X_test)  print("LDA Accuracy:", accuracy_score(y_test, y_pred_lda)) print("Confusion Matrix:\n", confusion_matrix(y_test, y_pred_lda)) print("Classification Report:\n", classification_report(y_test, y_pred_lda))

Output:

LDA Accuracy: 0.8266666666666667
Confusion Matrix (LDA):
 [[ 75   4  22]
 [ 16  71   0]
 [  0  10 102]]
Classification Report (LDA):
               precision    recall  f1-score   support

           0       0.82      0.74      0.78       101
           1       0.84      0.82      0.83        87
           2       0.82      0.91      0.86       112

    accuracy                           0.83       300
   macro avg       0.83      0.82      0.82       300
weighted avg       0.83      0.83      0.83       300

Applying Quadratic Discriminant Analysis (QDA)

Python

# Initialize and train the QDA model qda = QuadraticDiscriminantAnalysis() qda.fit(X_train, y_train)  # Make predictions y_pred_qda = qda.predict(X_test)  # Evaluate the model print("QDA Accuracy:", accuracy_score(y_test, y_pred_qda)) print("Confusion Matrix:\n", confusion_matrix(y_test, y_pred_qda)) print("Classification Report:\n", classification_report(y_test, y_pred_qda))

Output:

QDA Accuracy: 0.93
Confusion Matrix (QDA):
 [[ 96   2   3]
 [ 10  77   0]
 [  4   2 106]]
Classification Report (QDA):
               precision    recall  f1-score   support

           0       0.87      0.95      0.91       101
           1       0.95      0.89      0.92        87
           2       0.97      0.95      0.96       112

    accuracy                           0.93       300
   macro avg       0.93      0.93      0.93       300
weighted avg       0.93      0.93      0.93       300

Visualizing Linear and Quadratic Discriminant Analysis

For visualization let's plot decision boundaries , the decision border is a line that divides the two classes of data points. The goal of a classifier is to predict the class of a new data point, based on its features. The decision border shows the classifier's rule for splitting the classes.

Python

def plot_decision_boundaries(X, y, model, title, subplot_index):     plt.subplot(subplot_index)     x_min, x_max = X[:, 0].min() - 1, X[:, 0].max() + 1     y_min, y_max = X[:, 1].min() - 1, X[:, 1].max() + 1     xx, yy = np.meshgrid(np.arange(x_min, x_max, 0.01),                          np.arange(y_min, y_max, 0.01))     Z = model.predict(np.c_[xx.ravel(), yy.ravel()])     Z = Z.reshape(xx.shape)     plt.contourf(xx, yy, Z, alpha=0.8)     plt.scatter(X[:, 0], X[:, 1], c=y, edgecolors='k', marker='o')     plt.title(title)     plt.xlabel('Feature 1')     plt.ylabel('Feature 2')   plt.figure(figsize=(10, 4)) # Plot decision boundaries for LDA plot_decision_boundaries(X_test, y_test, lda, "LDA Decision Boundary", 121)  # Plot decision boundaries for QDA plot_decision_boundaries(X_test, y_test, qda, "QDA Decision Boundary", 122)  plt.tight_layout() plt.show()

Output:

qda--lda — Decision Boundary Plots for LDA and QDA

The number of dots in the picture does not appear to be linked with the leftovers. Residue, in this case, refers to the difference between the expected value of a data point and its real value.

LDA projects data from a higher-dimensional space onto a lower-dimensional space in a way that maximizes the separation between different classes. In this case, the decision boundary likely separates the data points into two or more classes while QDA allows for a more complex connection. The QDA decision boundary looks to be more flexible than the LDA decision boundary, which may help it to better fit the data in some cases.

Conclusion

Finally, for supervised classification problems, Linear Discriminant Analysis (LDA) and Quadratic Discriminant Analysis (QDA) are effective methods. QDA allows each class to have its own covariance matrix, while LDA relaxes this condition by assuming that the classes have equal covariance matrices. Both approaches are practical and have their merits; Scikit-Learn offers handy implementations that make integrating them into machine learning pipelines simple.

Quadratic Discriminant Analysis

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Machine Learning

Linear and Quadratic Discriminant Analysis using Sklearn

Understanding Linear and Quadratic Discriminant Analysis

Linear Discriminant Analysis (LDA)

Quadratic Discriminant Analysis (QDA)

Implementing Linear and Quadratic Discriminant Analysis with Scikit-Learn

Applying Linear Discriminant Analysis (LDA)

Applying Quadratic Discriminant Analysis (QDA)

Visualizing Linear and Quadratic Discriminant Analysis

Conclusion

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